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Anaerobic Fermentation - In anaerobic fermentation, a provision for aeration is usually not needed. But in some cases, aeration may be needed initially for inoculum build up. In most cases, a mixing device is also unnecessary; while in some cases initial mixing of the inoculum is necessary. Once the fermentation begins, the gas produced in the process generates sufficient mixing.

The air present in the headspace of the fermentor should be replaced by CO2, H2, N2 or a suitable mixture of these; this is particularly important for obligate anaerobes like Clostridium.

The fermentation usually liberates CO2 and H2, which are collected and used, e.g., CO2 for making dry ice and methanol, and for bubbling into freshly inoculated fermenters.
In case of acetogens and other gas utilizing bacteria, O2free sterile CO2 or other gases are bubbled through the medium. Acetogens have been cultured in 400 I fermenters by bubbling sterile CO2 and 3, kg cells could be harvested in each run.

Recovery of products from anaerobic fermenters does not require anaerobic conditions. But many enzymes of such organisms are highly O2, sensitive. Therefore, when recovery of such enzymes is the objective, cells must be harvested under strictly anaerobic conditions.