Molecular Maps of Animal Genome

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  Molecular Maps of Animal Genome

  Molecular Markers - Restriction Fragment Length Polymorphisms - RFLPs

  Random Amplified Polymorphic DNAs (RAPDs)

  Minisatellites OR VNTRs (Variable Number of Tandem Repeats) & Microsatellites OR SSR (Simple Sequence Repeats)

 Properties of RFLPs and RAPDs

  Steps Involved in RFLP and RAPD Analysis

  Different Procedures for Mapping of Molecular Markers

 Linkage Between Molecular and Phenotypic Markers

Theory of RH Mapping

  Example of RH Mapping

 Confirmation of RH Map by Pulsed Field Gel Electrophoresis - PFGE

 Cytogenetic RFLP Maps Using PCR

  Physical Maps Using Molecular Markers

 Physical Maps Using Chromosomal Aberrations

 Physical Maps Using in Situ Hybridization

 Physical Maps Using Yeast Artificial Chromosomes (YAC) and ISH

  Physical Maps Using Chromosome Walking and Jumping (Hopping)

  Fragmentation of a Chromosome

 Positioning of a Cloned Sequence on the Chromosome

 Physical Mapping of Chromosome Ends Using Telomeric Fragments

 Top Down ( Restriction Mapping) Vs Bottom Up ) Contig Mapping) Approaches

 Sequence Tagged Sites (STS) and Expressed Sequence Tags (EST)

  Integrated Genome Maps

  Sequencing of Genomes

Molecular Maps of Animal Genome

Molecular Maps of Animal Genome - In recent years, with the advent of recombinant DNA and PCR technologies, successful efforts have been made to prepare genetic, cytogenetic and physical maps of animal genomes.

These maps utilize molecular markers in the form of RFLPs (restriction fragment length polymorphisims), RAPDs or 'rapids' (random amplified polymorphic DNAs), minisatellites or VNTRs (variable number of tandem repeats) and microsatellites or SSRs (simple sequence repeats).

Preparation of physical maps is also facilitated by the preparation of contiguous sets of overlapping clones (called 'contigs') in cosmid and Y AC (yeast artificial chromosome) vectors.

Chromosome walking, chromosome jumping, in situ hybridization (ISH) and several other techniques have also been used for preparation of physical maps. Various aspects of these molecular maps of animal genomes are briefly described in this chapter.

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  Software for Construction of Linkage Maps

  Molecular Genetic Maps in Humans - Homosapiens

  Molecular Genetic Maps in Mouse

  Molecular Genetic Maps in Other Animal Species

 Cytogenetic Maps Using Molecular Markers

  Cytogenetic Maps Using Chromosome Specific Markers

  Use of Flow Sorted and Microdissected Chromosomes

 Cytogenetic RFLP Maps using Radiation Hybrid (RH) Mapping