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Multistage Bioreactors - Such culture systems use two or more bioreactors in a specified sequence, each of which carries out a specific step of the total production process. The simplest situation would involve two bioreactors. For the production of a biochemical like shikonin, both the bioreactors are of batch type: the first bioreactor provides conditions for rapid cell proliferation and favours biomass production, while the second bioreactor has conditions conducive for shikonin biosynthesis and accumulation.

The cell biomass is collected from the first stage bioreactor and is used as inoculum for the second stage reactor.

Similarly, for large scale somatic embryo (SE) production, the first reactor may be in continuous mode, while the second may be of batch type. The continuous first stage reactor provides the conditions necessary for rapid proliferation of embryogenic cells (but not for SE development).

The cell mass from this bioreactor serves as a continuous source of inoculum for the second stage batch type bioreactor, which has conditions necessary for embryo development and maturation (but not for cell proliferation).The use of continuous first stage bioreactor:

(i) avoids the time, labour and cost needed for cleaning, etc. of a batch reactor between two runs,

(ii) eliminates the lag phase of batch cultures, and

(iii) provides a more homogeneous and actively growing cell population.

However, continuous cultures, due to their long run periods, have a greater contamination risk than batch bioreactors.