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DNA Chips - DNA chips are thin wafers of silicon glass carrying many different oligonucleotides synthesized at a very high density (300,000 to over 1 million oligonucleotides/cm2) directly onto the wafer. The oligonucleotides are synthesized at a high spatial resolution and in precise locations; each oligonucleotide has the sequence of a different gene present in the genome.

Therefore, sequence information for the genes to be represented in the DNA chip must be available.

The oligonucleotide synthesis is based on two techniques called photolithography and solid phase DNA synthesis; it uses a series of building blocks that contain photochemically removable protective groups.

The DNA chips are inverted and mounted in a temperature controlled hybridization chamber into which fluorescently labelled cDNA preparation is injected and allowed to hybridize with the oligonucleotides.

Laser excitation enters through the back of the glass support focussed at the interface of the array surface and target solution. Fluorescent emission is collected by a lens and passed on to a sensitive detector and a quantitative assay of hybridization intensity is obtained. DNA chips present an alternative to the DNA microarrays.