Recombinant DNA Technology

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 Recombinant DNA Technology

  Restriction Endonucleases

  Types of Restriction Endonucleases

  Nomenclature of Restriction Endonucleases

  Some Restriction Endonucleases

  Recognition Sequences for Type II Endonucleases

 Cleavage Patterns of Type II Restriction Endonucleases

  Modification of Cut Ends

  Steps in Gene Cloning

  Synthesis of Complete Gene

  Gene Amplification Through Polymerase Chain Reaction

  Procedure of PCR - Polymerase Chain Reaction

  Applications of PCR - Polymerase Chain Reaction

  Comparison of PCR Versus Gene Cloning

  Vectors

  Properties of Good Vector

  Cloning and Expression Vectors

  E.Coli Vectors

  Properties of Good Host

  Plasmid Vectors

  Antibiotic Resistance Genes Found in R Plasmids,their Proteins

  ARS Vectors

  Minichromosome Vectors

 Yeast Artificial Chromosome (YAC) Vectors

  Vectors for Animals

  SV40 Vectors

  SV40 Transducting Vectors

  Late Replacement Vectors

  Early Replacement Vectors

  SV40 Plasmid Vectors

  Bovine Papillomavirus (BPV) Vectors

  Retrovirus Vectors

  Vectors for Plants

  Integration of the DNA Insert into the Vector

  Introduction of the Recombinant DNA into the Suitable Host

  Selection of Recombinant Clones

  Identification of Clones Having Recombinant DNAs

  Selection of Clone Containing A Specific DNA Insert

  Multiplication, Expression and Integration of the DNA Insert in Host Genome

  Colony Hybridization

  Southern Hybridization

  Dot Blot Technique

  DNA Sequencing

  Automated DNA Sequencing

  Northern Hybridization

  Western Blotting

  Probes

  Enzyme Linked Immunosorbent Assay - ELISA

  Nick Translation and End Filling

  Gel Electrophoresis

  Protein Analysis

  Microarrays

  DNA chips

  Applications of Microarrays / DNA Chips

Recombinant DNA Technology

Recombinant DNA Technology - In nature, gene transfers are rather imprecise, and their range, in tenns of species involved, is remarkably limited. The above problems are circumvented by the recombinant DNA technology. A recombinant DNA molecule is produced by joining together two or more DNA segments usually originating from different organisms.

More specifically, a recombinant DNA molecule is a vector into which the desired DNA fragment has been inserted to enable its cloning in an appropriate host. This is achieved by using specific enzymes for cutting the DNA (restriction enzymes) into suitable fragments and then for joining together the appropriate fragments (ligation).

In this manner, a gene may be produced, which contains the. coding region from one organism joined to regulatory sequences from another organism; such a gene is called chimaeric gene. Clearly, the capability to produce recombinant DNA molecules has given man the power and opportunity to create novel gene functions to suit specific needs.

Recombinant DNA molecules are produced with one of the following three objectives:

(1) to obtain a large number of copies of specific DNA fragments,

(2) to recover large quantities of the protein produced by the concerned gene, or

(3) to integrate the gene in question into the chromosome of a target organism where it expresses itself. Even for the latter two objectives, it is essential to first obtain a large number of copies of the concerned genes.

To achieve this, the DNA segments are integrated into a self-replicating DNA molecule called vector; most commonly used vectors are either bacterial plasmids or DNA viruses. All these steps concerned with piecing together DNA segments of diverse origin and placing them into a suitable vector together constitute recombinant DNA technology.

The DNA segment to be cloned is called DNA insert. Recombinant DNAs are introduced into a suitable organism, usually a bacterium; this organism is called host, while the process is called transformation. The transformed host cells are selected and cloned.

The recombinant DNA present in such clones would replicate either in synchrony with or independent of the host cell; the gene present in 'the vector mayor may not express itself, i.e., direct the synthesis of concerned polypeptide. The step concerned with transformation of a suitable host with recombinant DNA, and cloning of the transformed cells is called DNA cloning or gene cloning.

However, often DNA or gene cloning is taken to include both the development of recombinant DNAs as well as their cloning in a suitable host. Similarly, often the term recombinant DNA technology is used as a synonym for DNA or gene cloning used in the broader sense. A rather popular term for these activities is genetic engineering.

A clone consists of asexual progeny of a single individual or cell, while the process/technique of producing a clone is called cloning. As a result, all the individuals of a clone have the same genotype, which is also identical with that of the individual from which the clone was derived.

Therefore, the genomes present in members of a single clone are also identical; this applies to the recombinant DNA as well. Therefore, gene or DNA cloning produces large numbers of copies of the gene/DNA being cloned.

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  Isolation of Desired DNA

  cDNA Library

  Genomic Library

  Chemical Synthesis of Gene

  Phosphodiester Approach

  Phosphotriester Approach

  Agents Used for the Protection and Deprotection of Different Reactive Groups of Nucleotides used in Chemical Synthesis of DNA

  Phophite Triester Approach

  Applications of Synthetic Oligonucleotides

  pBR322

  pUC18/19

  Bacteriophage Vectors

  λ Phage Vectors

  Selection of Recombinant λ DNAs

  Infection of E.Coli Cells with λ Vectors

  Phage M13 Vectors

  Properties of M13 Vectors

  Selection of Recombinant M13 DNAs

  Cosmid Vectors

  Phasmid Vectors

  Shuttle Vectors

  Yeast Vectors