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Selection of Recombinant M13 DNAs - DNA inserts are placed within the 507 bp noncoding region, which also contains the origin of replication, in such a way that replication is not affected. The selection strategy for recombinant DNA utilizes a part of the E. coli lacZ gene (lacZα) in the same manner as in the pUC series of plasmid vectors.

The unchanged Ml3 vectors produce blue plaques on the lawn of an appropriate E. coli strain, e.g., 71-18, grown on a medium having X-gal plus IPTG.

In contrast, the recombinant vectors produce colourless plaques, which are readily identified. A 42 bp poly linker sequence having several unique restriction sites is so placed within the lacZα that it allows the production of amino terminal portion of the enzyme β-galactosidase.

However, when a DNA insert is placed anywhere within the polylinker sequence the formation of amino terminal part of the enzyme is prevented. It may be pointed out that the pUC series of plasmid vectors also employ a similarly placed poly linker sequence.