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Transfer of TDNA - T-DNA transfer is brought about by the vir region. The vir region is activated by the phenolic signal molecules acetosyringone and α-hydroxyacetosyringone, which are produced by wounded tissues of virtually all dicot plant species, and constitute the wound response.

These molecules bind to the virA gene product, the VirA protein. The VirA acts as a receptor for these signal molecules and becomes activated due to their binding to it. The activated VirA functions as an autokinase and phosphorylates itself. The phosphorylated VirA then phosphorylates Vir G protein, which then, possibly, dimerises and induces the expression of all the 8 vir operons.

Thus the signal phenolic molecules bind to VirA protein which then phosphorylates itself and Vir G protein, a DNA binding protein. Phosphorylated Vir G dimerises, and induces the transcription of all the 8 vir operons. Vir D 1 protein has topoisomerase activity; it binds to the right border sequence and relaxes supercoiling, which facilitates the action of protein VirD2. VirD2 is an endonuclease; it nicks at the right border and covalently binds (and remains bound during the T-DNA transfer) to the 5'-end so generated.

The 3'-end produced at the site of nick serves as a primer for DNA synthesis; as a result, the T-DNA strand is displaced from the DNA duplex. The T-DNA strand is again nicked at the left border to generate a single-strand copy of T-DNA. VirE2 protein is a single-strand binding protein; about 600 copies of it bind to the single-strand T-DNA and protect it from nuclease action.

Operon vir B has 11 genes, which encode mostly membrane bound proteins. Most likely Vir B proteins, together with VirD4 protein, participate in conjugal tube formation between the bacterial and plant cells, which provides a channel for T-DNA transfer. Vir B 11 has ATPase activity and generates energy needed for the delivery of T-DNA into the plant cells.

The endonuclease VirD2, which nicks the right border and remains covalently bound to the 5'­end of the single-strand T-DNA copy, has a signal sequence, which drives it towards the nucleus of the transformed plant cell (after the delivery of T­DNA into the plant cell). The T-DNA most likely enters the nucleus through nuclear pore complex.